Publikationen der Professur und der Abteilung Fischgenetik

peer reviewed

  1. Nadine Schäfer, Yagmur Kaya, Henrike Rebl, Marcus Stüeken, Alexander Rebl, Julien A. Nguinkal, Ronald M. Brunner, George P. Franz, Tom Goldammer, Marieke Verleih, and Bianka Grunow. Insights into Early Ontogenesis: Characterization of Stress and Development Key Genes of Sander lucioperca (L., 1758) and two in vitro models SLUlar1 & WF2. Fish Physiology and Biochemistry 2021, 9th Feb, https://doi.org/10.1007/s10695-021-00929-6
  2. Joan Martorell-Ribera, Marzia Tindara Venuto, Winfried Otten, Ronald M. Brunner, Tom Goldammer, Alexander Rebl, Ulrike Gimsa. Time-Dependent Effects of Acute Handling on the Brain Monoamine System of the Salmonid Coregonus maraena. Frontiers in Neuroscience 2020,14: 591738. doi: 10.3389/fnins.2020.591738
  3. Lidia de los Ríos-Pérez, Julien A. Nguinkal, Marieke Verleih, Alexander Rebl, Ronald M. Brunner, Jan Klosa, Nadine Schäfer, Marcus Stüeken, Tom Goldammer, Dörte Wittenburg: An ultra-high density SNP-based linkage map for enhancing the pikeperch (Sander lucioperca) genome assembly to chromosome-scale. Scientific Reports 2020, 10: 22335. doi: https://doi.org/10.1038/s41598-020-79358-z
  4. Rebl A, Korytář T, Borchel A, Bochert R, Strzelczyk JE, Goldammer T, Verleih M.: The synergistic interaction of thermal stress coupled with overstocking strongly modulates the transcriptomic activity and immune capacity of rainbow trout (Oncorhynchus mykiss). Scientific Reports 2020 10(1):14913. doi: 10.1038/s41598-020-71852-8.
  5. Koll R, Martorell Ribera J, Brunner RM, Rebl A, Goldammer T. Gene Profiling in the Adipose Fin of Salmonid Fishes Supports its Function as a Flow Sensor. Genes (Basel) 2020, 11(1), 21; https://doi.org/10.3390/genes11010021. 
  6. Sarais F, Rebl H, Verleih M, Ostermann S, Krasnov A, Köllner B, Goldammer T, Rebl A.: Characterisation of the teleostean κB-Ras family: The two members NKIRAS1 and NKIRAS2 from rainbow trout influence the activity of NF-κB in opposite ways. Fish and Shellfish Immunology 2020 S1050-4648(20)30616-1. doi: 10.1016/j.fsi.2020.08.052. 
  7. de Los Ríos-Pérez L, Brunner RM, Hadlich F, Rebl A, Kühn C, Wittenburg D, Goldammer T, Verleih M. Comparative Analysis of the Transcriptome and Distribution of Putative SNPs in Two Rainbow Trout (Oncorhynchus mykiss) Breeding Strains by Using Next-Generation Sequencing. Genes (Basel) 2020 11(8):841. doi: 10.3390/genes11080841.
  8. Bornhöfft KF, Martorell Ribera J, Viergutz T, Venuto MT, Gimsa U, Galuska SP, Rebl A.: Characterization of Sialic Acid-Binding Immunoglobulin-Type Lectins in Fish Reveals Teleost-Specific Structures and Expression Patterns. Cells 2020, 9(4):836. doi: 10.3390/cells9040836.
  9. Tindara Venuto M, Decloquement M, Martorell Ribera J, Noel M, Rebl A, Cogez V, Petit D, Galuska SP, Harduin-Lepers A.: Vertebrate Alpha2,8-Sialyltransferases (ST8Sia): A Teleost Perspective. International Journal of Molecular Science 2020, 21(2). pii: E513.doi: 10.3390/ijms21020513.
  10. Martorell Ribera J, Nipkow M, Viergutz T, Brunner RM, Bochert R, Koll R, Goldammer T, Gimsa U, Rebl A. Early response of salmonid head-kidney cells to stress hormones and toll-like receptor ligands. Fish and  Shellfish Immunology 2020 Mar; 98:950-961. doi: 10.1016/j.fsi.2019.11.058. 
  11. Wolfien M, Galow AM, Müller P, Bartsch M, Brunner RM, Goldammer T, Wolkenhauer O, Hoeflich A, David R. Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity. Cells 2020,  Jan 28;9(2). pii: E318. doi: 10.3390/cells9020318.
  12. Galow AM, Wolfien M, Müller P, Bartsch M, Brunner RM, Hoeflich A, Wolkenhauer O, David R, Goldammer T. Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mice. Cells 2020, May 6;9(5):1144. doi: 10.3390/cells9051144.
  13. Wolfien M, Galow AM, Müller P, Bartsch M, Brunner RM, Goldammer T, Wolkenhauer O, Hoeflich A, David R. Single nuclei sequencing of entire mammalian hearts: strain-dependent cell-type composition and velocity. Cardiovascular Research 2020 Jun 1;116(7):1249-1251. doi: 10.1093/cvr/cvaa054.
  14. Krasnov A, Afanasyev S, Nylund S, Rebl A. Multigene Expression Assay for Assessment of the Immune Status of Atlantic Salmon. Genes (Basel) 2020 Oct 22;11(11):1236. doi: 10.3390/genes11111236
  15. Koll R, Martorell Ribera J, Brunner RM, Rebl A, Goldammer T. Gene Profiling in the Adipose Fin of Salmonid Fishes Supports its Function as a Flow Sensor. Genes (Basel) 2019 Dec 23;11(1). pii: E21. doi: 10.3390/genes11010021.
  16. Nguinkal JA, Brunner RM, Verleih M, Rebl A, de Los Ríos-Pérez L, Schäfer N, Hadlich F, Stüeken M, Wittenburg D, Goldammer T. The First Highly Contiguous Genome Assembly of Pikeperch (Sander lucioperca), an Emerging Aquaculture Species in Europe. Genes (Basel) 2019 Sep 13;10(9). pii: E708. doi: 10.3390/genes10090708.
  17. Borchel A, Verleih M, Kühn Ca, Rebl A, Goldammer T. Evolutionary expression differences of creatine synthesis-related genes: Implications for skeletal muscle metabolism in fish. Scientific Reports 2019; 9(1):5429. 
  18. Verleih M, Borchel A, Rebl A, Brenmoehl J, Kühn Ca, Goldammer T. A molecular survey of programmed cell death in rainbow trout: Structural and functional specifications of apoptotic key molecules. Comparative Biochemistry & Physiology, Part B Biochem Mol Biol. 2019 Apr; 230:57-69.
  19. SwirpliesF, Wuertz S, Baßmann B, Orban A, Schäfer N, Brunner RM, Hadlich F, Goldammer T, Rebl A. Identification of molecular stress indicators in pikeperch Sander lucioperca correlating with rising water temperatures. Aquaculture 2019; 501:260-271.

Publikationen der Abteilung Fischgenetik vor 2019

peer reviewed

  1. Rebl A, Verleih M, Nipkow M, Altmann S, Bochert R, Goldammer T. Gradual and Acute Temperature Rise Induces Crossing Endocrine, Metabolic, and Immunological Pathways in Maraena Whitefish (Coregonus maraena). Frontiers in Genetics 2018 Jul 19; 9:241.
  2. Bornhöfft KF, Goldammer T, Rebl A, Galuska SP. Siglecs: A journey through the evolution of sialic acid-binding immunoglobulin-type lectins. Developmental & Comparative Immunology 2018 Sep; 86:219-231.
  3. Nipkow M, Wirthgen E, Luft P, Rebl A, Hoeflich A, Goldammer T. Characterization of igf1 and igf2 genes during maraena whitefish (Coregonus maraena) ontogeny and the effect of temperature on embryogenesis and igf expression. Growth Hormon IGF Research 2018 Jun; 40:32-43.
  4. Rebl A, Goldammer T. Under control: The innate immunity of fish from the inhibitors' perspective. Fish & Shellfish Immunology 2018 Jun; 77:328-349.
  5. Borchel A, Verleih M, Rebl A, Goldammer T. Identification of genes involved in cold-shock response in rainbow trout (Oncorhynchus mykiss). Journal of Genetics 2017 Sep; 96(4):701-706.
  6. Borchel A, Komisarczuk AZ, Rebl A, Goldammer T, Nilsen F. Systematic identification and characterization of stress-inducible heat shock proteins (HSPs) in the salmon louse (Lepeophtheirus salmonis). Cell Stress Chaperones 2018 Jan; 23(1):127-139.
  7. Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop BF, Lien S, Maass A, Martin SAM, McGinnity P, Montecino M, Naish KA, Nichols KM, Ólafsson K, Omholt SW, Palti Y, Plastow GS, Rexroad CE Rd, Rise ML, Ritchie RJ, Sandve SR, Schulte PM, Tello A, Vidal R, Vik JO, Wargelius A, Yáñez JM; FAASG Consortium. Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture. BMC Genomics 2017 Jun 27; 18(1):484. 
  8. Borchel A, Verleih A, Rebl A, Goldammer T. Identification of genes involved in cold-shock response in rainbow trout (Oncorhynchus mykiss). Journal of Genetics 2017 Sep; 96(4):701-706.
  9. Rebl A, Zebunke M, Borchel A, Bochert R, Verleih M, Goldammer T. Microarray-predicted marker genes and molecular pathways indicating crowding stress in rainbow trout (Oncorhynchus mykiss). Aquaculture 2017 April; 473:355-365. 
  10. Kaiser B, Böttner M, Wedel T, Brunner RM, Goldammer T, Lesko S, Gäbel G, Gleich A, Pfannkuche H. Establishment and characterization of an SV40 large T antigen-transduced porcine colonic epithelial cell line. Cells Tissues Organs 2017; 203(5):267-286. 
  11. Köbis JM, Rebl H, Goldammer T, Rebl A. Multiple gene and transcript variants encoding trout C-polysaccharide binding proteins are differentially but strongly induced after infection with Aeromonas salmonicida. Fish & Shellfish Immunology 2017 Jan; 60:509-519. 
  12. Rebl A, Rebl H, Köbis JM, Goldammer T, Seyfert HM. ST2 from rainbow trout quenches TLR signalling, localises at the nuclear membrane and allows the nuclear translocation of MYD88. Developmental & Comparative Immunology 2017 Feb; 67:139-152. 
  13. Korytář T, Nipkow M, Altmann S, Goldammer T, Köllner B, Rebl A. Adverse husbandry of maraena whitefish directs the immune system to increase mobilization of myeloid cells and proinflammatory responses. Frontiers in Immunology 2016 Dec 23; 7:631.
  14. Brietzke A, Borchel A, Altmann S, Nipkow M, Rebl A, Brunner RM, Goldammer T. Transcriptome sequencing of maraena whitefish (Coregonus maraena). Marine Genomics 2016 Oct; 29:27-29. 
  15. Altmann S, Korytář T, Kaczmarzyk D, Nipkow M, Kühn Ca, Goldammer T, Rebl A. Toll-like receptors in maraena whitefish: Evolutionary relationship among salmonid fishes and patterns of response to Aeromonas salmonicida. Fish & Shellfish Immunology 2016 Jul; 54:391-401. 
  16. Brietzke A, Arnemo M, Gjøen T, Rebl H, Korytář T, Goldammer T, Rebl A, Seyfert HM. Structurally diverse genes encode Tlr2 in rainbow trout: The conserved receptor cannot be stimulated by classical ligands to activate NF-κB in vitro. Developmental & Comparative Immunology 2016 Jan; 54(1):75-88.
  17. Brietzke A, Korytář T, Jaros J, Köllner B, Goldammer T, Seyfert HM, Rebl A. Aeromonas salmonicida infection only moderately regulates expression of factors contributing to toll-like receptor signaling but massively activates the cellular and humoral branches of innate immunity in rainbow trout (Oncorhynchus mykiss). Journal of Immunology Research 2015 :901015. doi: 10.1155/2015/901015.
  18. Verleih M, Borchel A, Krasnov A, Rebl A, Korytář T, Kühn Ca, Goldammer T. Impact of thermal stress on kidney-specific gene expression in farmed regional and imported rainbow trout. Marine Biotechnology (NY). 2015 Oct; 17(5):576-592. 
  19. Kromik A, Ulrich R, Kusenda M, Tipold A, Stein VM, Hellige M, Dziallas P, Hadlich F, Widmann P, Goldammer T, Baumgärtner W, Rehage J, Segelke D, Weikard R, Kühn C. The mammalian cervical vertebrae blueprint depends on the T (brachyury) gene. Genetics 2015 Mar; 199(3):873-883.
  20. Zante MD, Borchel A, Brunner RM, Goldammer T, Rebl A. Cloning and characterization of the proximal promoter region of rainbow trout (Oncorhynchus mykiss) interleukin-6 gene. Fish & Shellfish Immunology 2015 Mar; 43(1):249-256. 
  21. Köbis JM, Rebl A, Kühn Ca, Korytář T, Köllner B, Goldammer T. Comprehensive and comparative transcription analyses of the complement pathway in rainbow trout. Fish & Shellfish Immunology 2015 Jan; 42(1):98-107. 
  22. Borchel A, Verleih M, Rebl A, Kühn Ca, Goldammer T. Creatine metabolism differs between mammals and rainbow trout (Oncorhynchus mykiss). Springerplus 2014 Sep 9; 3:510, eCollection 2014.
  23. Altmann S, Rebl A, Kühn Ca, Goldammer T. Identification and de novo sequencing of housekeeping genes appropriate for gene expression analyses in farmed maraena whitefish (Coregonus maraena) during crowding stress. Fish Physiology and Biochemistry 2015 Apr; 41(2):397-412.
  24. Rebl A, Brietzke A, Goldammer T, Seyfert HM. GRP94 is encoded by two differentially expressed genes during development of rainbow trout (Oncorhynchus mykiss). Fish Physiology and Biochemistry 2014 Dec; 40(6):1917-1926. 
  25. Rebl A, Rebl H, Korytář T, Goldammer T, Seyfert HM. The proximal promoter of a novel interleukin-8-encoding gene in rainbow trout (Oncorhynchus mykiss) is strongly induced by CEBPA, but not NF-κB p65. Developmental & Comparative Immunology 2014 Oct; 46(2):155-164. 
  26. Brietzke A, Goldammer T, Rebl H, Korytář T, Köllner B, Yang W, Rebl A, Seyfert HM. Characterization of the interleukin 1 receptor-associated kinase 4 (IRAK4)-encoding gene in salmonid fish: the functional copy is rearranged in Oncorhynchus mykiss and that factor can impair TLR signaling in mammalian cells. Fish and Shellfish Immunology 2014 Jan; 36(1):206-214. 
  27. Rebl A, Korytář T, Köbis JM, Verleih M, Krasnov A, Jaros J, Kühn Ca, Köllner B, Goldammer T. Transcriptome profiling reveals insight into distinct immune responses to Aeromonas salmonicida in gill of two rainbow trout strains. Marine Biotechnology (NY) 2014 Jun; 16(3):333-348.
  28. Korytář T, Jaros J, Verleih M, Rebl A, Kotterba G, Kühn Ca, Goldammer T, Köllner B. Novel insights into the peritoneal inflammation of rainbow trout (Oncorhynchus mykiss). Fish and Shellfish Immunology 2013 Oct; 35(4):1192-9.
  29. Rebl A, Verleih M, Köbis JM, Kühn Ca, Wimmers K, Köllner B, Goldammer T. Transcriptome profiling of gill tissue in regionally bred and globally farmed rainbow trout strains reveals different strategies for coping with thermal stress. Marine Biotechnology (NY) 2013 Aug; 15(4):445-460. 
  30. Verleih M, Rebl A, Köllner B, Korytář T, Köbis JM, Kühn Ca, Wimmers K, Goldammer T. Iron-sulfur cluster scaffold (ISCU) gene is duplicated in salmonid fish and tissue and temperature dependent expressed in rainbow trout. Gene 2013 Jan 10; 512(2):251-258. 
  31. Köbis JM, Rebl A, Kühn Ca, Goldammer T. Comparison of splenic transcriptome activity of two rainbow trout strains differing in robustness under regional aquaculture conditions. Molecular Biology Reports 2013 Feb; 40(2):1955-1966. 
  32. Weikard R, Goldammer T, Brunner RM, Kuehn C. Tissue-specific mRNA expression patterns reveal a coordinated metabolic response associated with genetic selection for milk production in cows. Physiology Genomics 2012 Jul 15; 44(14):728-739. 
  33. Perucatti A, Genualdo V, Iannuzzi A, Rebl A, Di Berardino D, Goldammer T, Iannuzzi L. Advanced comparative cytogenetic analysis of X chromosomes in river buffalo, cattle, sheep, and human. Chromosome Research  2012 May; 20(4):413-425. 
  34. Rebl A, Verleih M, Köllner B, Korytář T, Goldammer T. Duplicated NELL2 genes show different expression patterns in two rainbow trout strains after temperature and pathogen challenge. Comparative Biochemistry & Physiology, Part B Biochem Mol Biol. 2012 Sep; 163(1):65-73. 
  35. Rebl A, Verleih M, Korytář T, Kühn Ca, Wimmers K, Köllner B, Goldammer T. Identification of differentially expressed protective genes in liver of two rainbow trout strains. Veterinary  Immunology & Immunopathology 2012 Jan 15; 145(1-2):305-315. 
  36. Rebl A, Köbis JM, Fischer U, Takizawa F, Verleih M, Wimmers K, Goldammer T. MARCH5 gene is duplicated in rainbow trout, but only fish-specific gene copy is up-regulated after VHSV infection. Fish & Shellfish Immunology 2011 Dec; 31(6):1041-1050. 
  37. Verleih M, Rebl A, Köllner B, Korytář T, Anders E, Wimmers K, Goldammer T. Comparative molecular characterization of the regucalcin (RGN) gene in rainbow trout (Oncorhynchus mykiss) and maraena whitefish (Coregonus maraena). Molecular Biology & Reproduction 2012 Apr; 39(4):4291-4300. 
  38. Di Meo GP, Goldammer T, Perucatti A, Genualdo V, Iannuzzi A, Incarnato D, Rebl A, Di Berardino D, Iannuzzi L. Extended cytogenetic maps of sheep chromosome 1 and their cattle and river buffalo homoeologues: comparison with the OAR1 RH map and human chromosomes 2, 3, 21 and 1q. Cytogenetics and Genome Ressearch 2011; 133(1):16-24. 
  39. Rebl A, Rebl H, Liu S, Goldammer T, Seyfert HM. Salmonid Tollip and MyD88 factors can functionally replace their mammalian orthologues in TLR-mediated trout SAA promoter activation. Developmental & Comparative Immunology 2011 Jan; 35(1):81-87. 
  40. Verleih M, Rebl A, Köllner B, Korytář T, Kotterba G, Anders E, Wimmers K, Goldammer T. Molecular characterization of PRR13 and its tissue-specific expression in rainbow trout (Oncorhynchus mykiss). Fish Physiology & Biochemistry 2010 Dec; 36(4):1271-1276. 
  41. Löhrke B, Xu J, Weitzel JM, Krüger B, Goldammer T, Viergutz T. N-acetylcysteine impairs survival of luteal cells through mitochondrial dysfunction. Cytometry A 2010 Apr; 77(4):310-320
  42. Yerebakan C, Niefeldt S, Prietz S, Klopsch C, Gäbel R, Kaminski A, Goldammer T, Rebl A, Zeisig V, Boltze J, Vollmar B, Ma N, Liebold A, Sandica E, Steinhoff G. Right ventricular diastolic performance is enhanced by intramyocardial Erythropoietin administration after surgically induced pressure overload. Thorac Cardiovasc Surgery 2010; 58 - V207. 
  43. Eberlein A, Kalbe C, Goldammer T, Brunner RM, Kuehn C, Weikard R. Analysis of structure and gene expression of bovine CCDC3 gene indicates a function in fat metabolism. Comparative Biochemistry & Physiology, Part B Biochem Mol Biol 2010 May; 156(1):19-25. 
  44. Eberlein A, Kalbe C, Goldammer T, Brunner RM, Kuehn C, Weikard R. Annotation of novel transcripts putatively relevant for bovine fat metabolism. Molecular Biology and Reproduction  2011 Jun; 38(5):2975-2986.
  45. Goldammer T, Di Meo GP, Lühken G, Drögemüller C, Wu CH, Kijas J, Dalrymple BP, Nicholas FW, Maddox JF, Iannuzzi L, Cockett NE.Molecular cytogenetics and gene mapping in sheep (Ovis aries, 2n = 54). Cytogenetic & Genome Research 2009; 126(1-2):63-76. 
  46. Rebl A, Goldammer T, Seyfert HM. Toll-like receptor signaling in bony fish. Veterinary Immunology and Immunopathology 2010 Apr 15; 134(3-4):139-50. 
  47. Verma S, Goldammer T, Aitken R. Cloning and expression of activation induced cytidine deaminase from Bos taurus. Veterinary Immunology & Immunopathology 2010 Apr 15; 134(3-4):151-159. 
  48. Rebl A, Anders E, Wimmers K, Goldammer T. Cloning and tissue-specific expression of a delta-COP homologue in a freshwater and a brackish water-adapted strain of rainbow trout (Oncorhynchus mykiss). Genes and Genetic Systems 2009 Jun; 84(3):239-243.
  49. Rebl A, Köllner B, Anders E, Wimmers K, Goldammer T. Peptidylarginine deiminase gene is differentially expressed in freshwater and brackish water rainbow trout. Molecular Biology and  Reproduction 2010 Jun; 37(5):2333-9. 
  50. Goldammer T, Brunner RM, Rebl A, Wu CH, Nomura K, Hadfield T, Gill C, Dalrymple BP, Womack JE, Cockett NE. A high-resolution radiation hybrid map of sheep chromosome X and comparison with human and cattle. Cytogenetics & Genome Research 2009; 125(1):40-45.
  51. Goldammer T, Kuehn C, Brunner RM, Weikard R. Evolutionary break point analysis between the proximal half of bovine chromosome 27 and conserved segments of the human genome. Cytogenetic and Genome Research 2009; 125(1):33-39. 
  52. Goldammer T, Brunner RM, Rebl A, Wu CH, Nomura K, Hadfield T, Maddox JF, Cockett NE. Cytogenetic anchoring of radiation hybrid and virtual maps of sheep chromosome X and comparison of X chromosomes in sheep, cattle, and human. Chromosome Research 2009; 17(4):497-506. 
  53. Wu CH, Jin W, Nomura K, Goldammer T, Hadfield T, Dalrymple BP, McWilliam S, Maddox JF, Cockett NE. A radiation hybrid comparative map of ovine chromosome 1 aligned to the virtual sheep genome. Animal Genetics 2009 Aug; 40(4):435-455. 
  54. Weikard R, Goldammer T, Eberlein A, Kuehn C. Novel transcripts discovered by mining genomic DNA from defined regions of bovine chromosome 6. BMC Genomics. 2009 Apr 24; 10:186.
  55. Perucatti A, Di Meo GP, Goldammer T, Incarnato D, Nicolae I, Brunner R, Iannuzzi L. FISH-mapping comparison between river buffalo chromosome 7 and sheep chromosome 6: assignment of new loci and comparison with HSA4. Cytogenetics and Genome Research 2009; 124(1):106-111. 
  56. Rebl A, Goldammer T, Fischer U, Köllner B, Seyfert HM. Characterization of two key molecules of teleost innate immunity from rainbow trout (Oncorhynchus mykiss): MyD88 and SAA. Veterinary Immunology and Immunopathology 2009 Sep 15; 131(1-2):122-126. 
  57. Rebl A, Anders E, Wimmers K, Goldammer T. Characterization of dehydrodolichyl diphosphate synthase gene in rainbow trout (Oncorhynchus mykiss). Comparative Biochemistry and  Physiology, Part B Biochem Mol Biol 2009 Mar; 152(3):260-5.